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Why 'good bacteria' is making your bloating worse

By Lauza Loistl··6 min read

You have done your reading, and the message was clear. Look after your gut, feed the good bacteria, and the bloating will settle. So you went all in. There is kefir in your breakfast, a forkful of sauerkraut with lunch, kombucha in the afternoon and kimchi with dinner. Every meal now carries something fermented, because that is what everyone seems to swear by. You have kept it up for weeks.

And your gut is louder than ever. More bloated by the evening, more gas, a gut that gurgles and grumbles and feels tight and uncomfortable after you eat. It makes no sense. You are doing the very thing that was meant to calm it down, and it has only got worse.

Fermented foods feed the microbial life already in your gut, so when there is too much fermentation happening in there to begin with, adding more bloats you rather than settles you. It is not a reason to fear them forever. If yours is already overworked, the kinder first step is often to ease right back for a few weeks so things can quieten, then bring ferments in slowly and in small amounts.

Fermented foods do not soothe your gut, they feed the life already living in it. That is a beautiful thing when your gut is in balance. You are topping up a thriving, well-ordered community, adding to something that is already working. But when there is already too much fermentation happening in there, or your gut reacts strongly to these foods, you are pouring fuel on the very fire you are trying to put out.

Think of your gut as a place that is meant to hum along quietly. Food comes in, it gets broken down in good order, and most of the activity happens out of sight and out of mind. Some gentle fermentation by your gut bacteria is normal and healthy. But sometimes the balance tips. There can be more of that bustling microbial life than the space comfortably holds, sitting where it is not meant to, busy in the wrong places. When that happens, much of what you eat gets churned up and gassy, and the result is bloating, wind and that restless gurgling you know too well.1

Now picture adding kefir, kombucha, sauerkraut and kimchi on top of that. These foods are alive, and they bring more activity with them. Into a settled gut, that is welcome company. Into an already crowded, overactive one, it is more of exactly what is causing the trouble.2 Your gut is not failing you. It is responding, honestly and predictably, to being asked to handle even more ferment than it already had.

This is why the kinder first step is sometimes less, not more. Not because fermented foods are the enemy, but because the order matters. When the ground is calm, ferments are a lovely thing to come back to. When it is not, easing right back for a while gives everything a chance to settle before you build up again. It usually comes down to three things. The state of your gut today, the amount you are eating, and the right sequence for you rather than for everyone.

And it is worth saying plainly. For a great many people, fermented foods are exactly the friend they are made out to be. This is not a reason to fear a jar of kimchi. It is an invitation to notice your own response. If every spoonful of sauerkraut leaves you more bloated rather than less, that is information, not failure, and certainly not a sign you simply need to push through with more.

If you are preparing for a pregnancy, there is a further reason to bother with the order rather than pushing on. A gut with too much microbial activity in the wrong place is also a gut that absorbs less well, and overgrowth in the small intestine is a recognised cause of shortfalls, vitamin B12 among them, because the bacteria consume it before you can.3 I would not stretch that into a claim about conceiving, because the evidence does not go there. What it does mean is narrower and still worth having. The months before a pregnancy are when you want the food you eat to actually reach you, so quietening an overworked gut first is not a delay. It is what makes everything you eat afterwards count.

This is really what I mean when I talk about contextual healthiness. The word good does not live inside the food. It lives in the meeting between a food and a body, on a particular day, in a particular state. The same kombucha that helps your friend feel light and settled might be the wrong ask for you right now, not because either of you is doing anything wrong, but because your guts are in different places. It is also why I am wary of one piece of advice handed to everyone. It skips the only question that actually matters, which is what your gut is doing at this moment.

If your bloating has grown worse the harder you try, the answer is not to pile on another rule. It is to start by understanding. What does your day feel like, when did the discomfort begin, what have you been adding, and what might your gut be telling you underneath it all. From there the adjustments are gentle, often quieting things down before reintroducing anything, and watching how you respond over a few weeks.

If this sounds like your kitchen and your evenings, you are not bad at looking after yourself. You may simply be feeding a gut that needs quiet before it needs more. That is a soft thing to change, and working out what your gut is actually asking for is the place to begin.

References

  1. When there are too many bacteria in the small intestine, their fermentation of carbohydrates produces excess gas, which causes abdominal distension and flatulence — the bloating and wind pattern. Sorathia SJ, Chippa V, Rivas JM, Small Intestinal Bacterial Overgrowth — StatPearls, 2023. 

  2. Fermentable carbohydrates that aren’t fully absorbed are fermented by gut bacteria, producing hydrogen and methane gas and aggravating bloating; cutting them back lowers measured intestinal gas and symptoms. Patcharatrakul T, Juntrapirat A, Lakananurak N, Gonlachanvit S, Effect of Structural Individual Low-FODMAP Dietary Advice vs. Brief Advice on IBS Symptoms and Intestinal Gas Production — Nutrients, 2019. 

  3. In small intestinal bacterial overgrowth the excess bacteria consume nutrients, vitamin B12 among them, which leads to B12 deficiency; deconjugated bile salts also cause fat malabsorption. Small Intestinal Bacterial Overgrowth (SIBO) — MSD Manual Professional Edition. 

This article is for education, not medical advice, and it isn't a substitute for personalised care. If any of it feels relevant to you, speak with a qualified practitioner about testing and what's right for your situation.

Lauza Loistl
Written by
Lauza Loistl
DipNT, CNM · Member of the ANP

Teaching online on women's health: hormones, fertility, and gut, and the kind of tiredness that builds up over years.

More about Lauza
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